| 1 | |  Gillingham FC | 46 | 23 | 14 | 9 | 66 | 39 | 27 | 83 | B17:00 | 30/03/13 | R 41  Fleetwood Town 2 Gillingham FC 2 G17:00 | 01/04/13 | R 42 Gillingham FC 1 Rotherham United 0 G17:00 | 06/04/13 | R 43 Gillingham FC 1 Torquay United 0 M17:00 | 13/04/13 | R 44 Cheltenham Town 1 Gillingham FC 0 B17:00 | 20/04/13 | R 45 Gillingham FC 2 Wimbledon 2 M17:00 | 27/04/13 | R 46 Burton Albion 3 Gillingham FC 2 |
| 2 | |  Rotherham United | 46 | 24 | 7 | 15 | 74 | 59 | 15 | 79 | M17:00 | 06/04/13 | R 43 Morecambe FC 2 Rotherham United 1 G21:45 | 09/04/13 | R 40 Rotherham United 4 Exeter City 1 G17:00 | 13/04/13 | R 44 Rotherham United 2 Fleetwood Town 1 G21:45 | 16/04/13 | R 34 Bradford City 0 Rotherham United 2 G17:00 | 20/04/13 | R 45 Plymouth Argyle 0 Rotherham United 1 G17:00 | 27/04/13 | R 46 Rotherham United 2 Aldershot Town FC 0 |
| 3 | |  Port Vale | 46 | 21 | 15 | 10 | 87 | 52 | 35 | 78 | B17:00 | 01/04/13 | R 42 Chesterfield FC 2 Port Vale 2 G21:45 | 05/04/13 | R 43 Port Vale 7 Burton Albion 1 B21:45 | 09/04/13 | R 40 Port Vale 1 Aldershot Town FC 1 B17:00 | 13/04/13 | R 44 Rochdale 2 Port Vale 2 B17:00 | 20/04/13 | R 45 Port Vale 2 Northampton Town 2 B17:00 | 27/04/13 | R 46 Wycombe Wanderers 1 Port Vale 1 |
| 4 | |  Burton Albion | 46 | 22 | 10 | 14 | 71 | 65 | 6 | 76 | G21:45 | 09/04/13 | R 40 Burton Albion 2 Wycombe Wanderers 0 G17:00 | 13/04/13 | R 44 Burton Albion 1 Plymouth Argyle 0 M17:00 | 20/04/13 | R 45 Bradford City 1 Burton Albion 0 G17:00 | 27/04/13 | R 46 Burton Albion 3 Gillingham FC 2 G21:45 | 02/05/13 | R semifinal Bradford City 2 Burton Albion 3 M14:00 | 05/05/13 | R semifinal Burton Albion 1 Bradford City 3 |
| 5 | |  Cheltenham Town | 46 | 20 | 15 | 11 | 58 | 51 | 7 | 75 | M17:00 | 06/04/13 | R 43 Plymouth Argyle 2 Cheltenham Town 0 G17:00 | 13/04/13 | R 44 Cheltenham Town 1 Gillingham FC 0 G17:00 | 20/04/13 | R 45 Exeter City 0 Cheltenham Town 1 B17:00 | 27/04/13 | R 46 Cheltenham Town 0 Bradford City 0 M21:45 | 02/05/13 | R semifinal Northampton Town 1 Cheltenham Town 0 M20:45 | 05/05/13 | R semifinal Cheltenham Town 0 Northampton Town 1 |
| 6 | |  Northampton Town | 46 | 21 | 10 | 15 | 64 | 55 | 9 | 73 | B17:00 | 20/04/13 | R 45 Port Vale 2 Northampton Town 2 G17:00 | 27/04/13 | R 46 Northampton Town 2 Barnet FC 0 G21:45 | 02/05/13 | R semifinal Northampton Town 1 Cheltenham Town 0 G20:45 | 05/05/13 | R semifinal Cheltenham Town 0 Northampton Town 1 M15:30 | 18/05/13 | R final Bradford City 3 Northampton Town 0 |
| 7 | |  Bradford City | 46 | 18 | 15 | 13 | 63 | 52 | 11 | 69 | G17:00 | 20/04/13 | R 45 Bradford City 1 Burton Albion 0 B17:00 | 27/04/13 | R 46 Cheltenham Town 0 Bradford City 0 M21:45 | 02/05/13 | R semifinal Bradford City 2 Burton Albion 3 G14:00 | 05/05/13 | R semifinal Burton Albion 1 Bradford City 3 G15:30 | 18/05/13 | R final Bradford City 3 Northampton Town 0 |
| 8 | |  Chesterfield FC | 46 | 18 | 13 | 15 | 60 | 45 | 15 | 67 | B17:00 | 01/04/13 | R 42 Chesterfield FC 2 Port Vale 2 G17:00 | 06/04/13 | R 43 Barnet FC 0 Chesterfield FC 2 B17:00 | 13/04/13 | R 44 Chesterfield FC 2 Bradford City 2 M21:45 | 16/04/13 | R 40 Chesterfield FC 1 Plymouth Argyle 2 G17:00 | 20/04/13 | R 45 Fleetwood Town 1 Chesterfield FC 3 G17:00 | 27/04/13 | R 46 Chesterfield FC 4 Exeter City 0 |
| 9 | |  Oxford United | 46 | 19 | 8 | 19 | 60 | 61 | -1 | 65 | B17:00 | 29/03/13 | R 41 Oxford United 1 Morecambe FC 1 M17:00 | 01/04/13 | R 42 Aldershot Town FC 3 Oxford United 2 M17:00 | 06/04/13 | R 43 Oxford United 0 Wycombe Wanderers 1 G17:00 | 13/04/13 | R 44 Dagenham and Redbridge FC 0 Oxford United 1 G17:00 | 20/04/13 | R 45 Oxford United 3 Rochdale 0 G17:00 | 27/04/13 | R 46 Accrington Stanley 0 Oxford United 3 |
| 10 | |  Exeter City | 46 | 18 | 10 | 18 | 63 | 62 | 1 | 64 | M17:00 | 01/04/13 | R 42 Exeter City 1 Rochdale 2 M17:00 | 06/04/13 | R 43 Exeter City 0 Dagenham and Redbridge FC 1 M21:45 | 09/04/13 | R 40 Rotherham United 4 Exeter City 1 B17:00 | 13/04/13 | R 44 Wimbledon 2 Exeter City 2 M17:00 | 20/04/13 | R 45 Exeter City 0 Cheltenham Town 1 M17:00 | 27/04/13 | R 46 Chesterfield FC 4 Exeter City 0 |
| 11 | |  Southend United | 46 | 16 | 13 | 17 | 61 | 55 | 6 | 61 | B15:00 | 01/04/13 | R 42 Southend United 1 Fleetwood Town 1 M21:45 | 10/04/13 | R 40 Rochdale 4 Southend United 2 B17:00 | 13/04/13 | R 44 Southend United 0 Bristol Rovers 0 G21:45 | 16/04/13 | R 43 Aldershot Town FC 0 Southend United 2 M17:00 | 20/04/13 | R 45 York City FC 2 Southend United 1 M17:00 | 27/04/13 | R 46 Southend United 0 Morecambe FC 1 |
| 12 | |  Rochdale | 46 | 16 | 13 | 17 | 68 | 70 | -2 | 61 | G17:00 | 01/04/13 | R 42 Exeter City 1 Rochdale 2 G17:00 | 06/04/13 | R 43 Fleetwood Town 0 Rochdale 3 G21:45 | 10/04/13 | R 40 Rochdale 4 Southend United 2 B17:00 | 13/04/13 | R 44 Rochdale 2 Port Vale 2 M17:00 | 20/04/13 | R 45 Oxford United 3 Rochdale 0 G17:00 | 27/04/13 | R 46 Rochdale 1 Plymouth Argyle 0 |
| 13 | |  Fleetwood Town | 46 | 15 | 15 | 16 | 55 | 57 | -2 | 60 | B17:00 | 30/03/13 | R 41 Fleetwood Town 2 Gillingham FC 2 B15:00 | 01/04/13 | R 42 Southend United 1 Fleetwood Town 1 M17:00 | 06/04/13 | R 43 Fleetwood Town 0 Rochdale 3 M17:00 | 13/04/13 | R 44 Rotherham United 2 Fleetwood Town 1 M17:00 | 20/04/13 | R 45 Fleetwood Town 1 Chesterfield FC 3 M17:00 | 27/04/13 | R 46 Wimbledon 2 Fleetwood Town 1 |
| 14 | |  Bristol Rovers | 46 | 16 | 12 | 18 | 60 | 69 | -9 | 60 | G17:00 | 01/04/13 | R 42 Dagenham and Redbridge FC 2 Bristol Rovers 4 G17:00 | 06/04/13 | R 43 Bristol Rovers 1 Wimbledon 0 M21:45 | 09/04/13 | R 40 Bradford City 4 Bristol Rovers 1 B17:00 | 13/04/13 | R 44 Southend United 0 Bristol Rovers 0 M17:00 | 20/04/13 | R 45 Bristol Rovers 0 Accrington Stanley 1 B17:00 | 27/04/13 | R 46 Torquay United 3 Bristol Rovers 3 |
| 15 | |  Wycombe Wanderers | 46 | 17 | 9 | 20 | 50 | 60 | -10 | 60 | G17:00 | 06/04/13 | R 43 Oxford United 0 Wycombe Wanderers 1 M21:45 | 09/04/13 | R 40 Burton Albion 2 Wycombe Wanderers 0 G17:00 | 13/04/13 | R 44 Wycombe Wanderers 2 Aldershot Town FC 1 B21:45 | 16/04/13 | R 39 Wycombe Wanderers 0 Northampton Town 0 M17:00 | 20/04/13 | R 45 Barnet FC 1 Wycombe Wanderers 0 B17:00 | 27/04/13 | R 46 Wycombe Wanderers 1 Port Vale 1 |
| 16 | |  Morecambe FC | 46 | 15 | 13 | 18 | 55 | 61 | -6 | 58 | B17:00 | 29/03/13 | R 41 Oxford United 1 Morecambe FC 1 M17:00 | 01/04/13 | R 42 Morecambe FC 0 Wycombe Wanderers 1 G17:00 | 06/04/13 | R 43 Morecambe FC 2 Rotherham United 1 M21:45 | 12/04/13 | R 44 Accrington Stanley 2 Morecambe FC 0 M17:00 | 20/04/13 | R 45 Morecambe FC 0 Torquay United 2 G17:00 | 27/04/13 | R 46 Southend United 0 Morecambe FC 1 |
| 17 | |  York City FC | 46 | 12 | 19 | 15 | 50 | 60 | -10 | 55 | B17:00 | 30/03/13 | R 41 Bristol Rovers 0 York City FC 0 G17:00 | 01/04/13 | R 42 York City FC 2 Plymouth Argyle 0 B17:00 | 06/04/13 | R 43 York City FC 1 Accrington Stanley 1 G17:00 | 13/04/13 | R 44 Northampton Town 0 York City FC 2 G17:00 | 20/04/13 | R 45 York City FC 2 Southend United 1 G17:00 | 27/04/13 | R 46 Dagenham and Redbridge FC 0 York City FC 1 |
| 18 | |  Accrington Stanley | 46 | 14 | 12 | 20 | 51 | 68 | -17 | 54 | G17:00 | 29/03/13 | R 41 Wycombe Wanderers 0 Accrington Stanley 1 B17:00 | 01/04/13 | R 42 Accrington Stanley 3 Burton Albion 3 B17:00 | 06/04/13 | R 43 York City FC 1 Accrington Stanley 1 G21:45 | 12/04/13 | R 44 Accrington Stanley 2 Morecambe FC 0 G17:00 | 20/04/13 | R 45 Bristol Rovers 0 Accrington Stanley 1 M17:00 | 27/04/13 | R 46 Accrington Stanley 0 Oxford United 3 |
| 19 | |  Torquay United | 46 | 13 | 14 | 19 | 55 | 62 | -7 | 53 | M17:00 | 01/04/13 | R 42 Torquay United 1 Bradford City 3 M17:00 | 06/04/13 | R 43 Gillingham FC 1 Torquay United 0 G21:45 | 16/04/13 | R 44 Torquay United 3 Barnet FC 2 G17:00 | 20/04/13 | R 45 Morecambe FC 0 Torquay United 2 B17:00 | 27/04/13 | R 46 Torquay United 3 Bristol Rovers 3 |
| 20 | |  Wimbledon | 46 | 14 | 11 | 21 | 54 | 76 | -22 | 53 | M17:00 | 29/03/13 | R 41 Rotherham United 1 Wimbledon 0 M17:00 | 01/04/13 | R 42 Wimbledon 0 Barnet FC 1 M17:00 | 06/04/13 | R 43 Bristol Rovers 1 Wimbledon 0 B17:00 | 13/04/13 | R 44 Wimbledon 2 Exeter City 2 B17:00 | 20/04/13 | R 45 Gillingham FC 2 Wimbledon 2 G17:00 | 27/04/13 | R 46 Wimbledon 2 Fleetwood Town 1 |
| 21 | |  Plymouth Argyle | 46 | 13 | 13 | 20 | 46 | 55 | -9 | 52 | M17:00 | 01/04/13 | R 42 York City FC 2 Plymouth Argyle 0 G17:00 | 06/04/13 | R 43 Plymouth Argyle 2 Cheltenham Town 0 M17:00 | 13/04/13 | R 44 Burton Albion 1 Plymouth Argyle 0 G21:45 | 16/04/13 | R 40 Chesterfield FC 1 Plymouth Argyle 2 M17:00 | 20/04/13 | R 45 Plymouth Argyle 0 Rotherham United 1 M17:00 | 27/04/13 | R 46 Rochdale 1 Plymouth Argyle 0 |
| 22 | |  Dagenham and Redbridge FC | 46 | 13 | 12 | 21 | 55 | 62 | -7 | 51 | B17:00 | 29/03/13 | R 41 Barnet FC 0 Dagenham and Redbridge FC 0 M17:00 | 01/04/13 | R 42 Dagenham and Redbridge FC 2 Bristol Rovers 4 G17:00 | 06/04/13 | R 43 Exeter City 0 Dagenham and Redbridge FC 1 M17:00 | 13/04/13 | R 44 Dagenham and Redbridge FC 0 Oxford United 1 M17:00 | 20/04/13 | R 45 Aldershot Town FC 1 Dagenham and Redbridge FC 0 M17:00 | 27/04/13 | R 46 Dagenham and Redbridge FC 0 York City FC 1 |
| 23 | |  Barnet FC | 46 | 13 | 12 | 21 | 47 | 59 | -12 | 51 | G17:00 | 01/04/13 | R 42 Wimbledon 0 Barnet FC 1 M17:00 | 06/04/13 | R 43 Barnet FC 0 Chesterfield FC 2 M21:45 | 16/04/13 | R 44 Torquay United 3 Barnet FC 2 G17:00 | 20/04/13 | R 45 Barnet FC 1 Wycombe Wanderers 0 M17:00 | 27/04/13 | R 46 Northampton Town 2 Barnet FC 0 |
| 24 | |  Aldershot Town FC | 46 | 11 | 15 | 20 | 42 | 60 | -18 | 48 | G17:00 | 01/04/13 | R 42 Aldershot Town FC 3 Oxford United 2 B21:45 | 09/04/13 | R 40 Port Vale 1 Aldershot Town FC 1 M17:00 | 13/04/13 | R 44 Wycombe Wanderers 2 Aldershot Town FC 1 M21:45 | 16/04/13 | R 43 Aldershot Town FC 0 Southend United 2 G17:00 | 20/04/13 | R 45 Aldershot Town FC 1 Dagenham and Redbridge FC 0 M17:00 | 27/04/13 | R 46 Rotherham United 2 Aldershot Town FC 0 |
